{ "_id": "6ac7884dde46216d5edd1c73", "Package": "survivalSL", "Type": "Package", "Title": "Super Learner for Survival Prediction from Censored Data", "Version": "1.1", "Description": "Several functions and S3 methods to construct a super\nlearner in the presence of censored times-to-event and to\nevaluate its prognostic capacities.", "License": "GPL (>=2)", "LazyLoad": "yes", "NeedsCompilation": "no", "BugReports": "https://github.com/chupverse/survivalSL/issues", "Authors@R": "c(person(\"Yohann\", \"Foucher\", role = c(\"aut\", \"cre\"), email = \"yohann.foucher@univ-poitiers.fr\", comment = c(ORCID = \"0000-0003-0330-7457\")), person(\"Camille\", \"Sabathe\", role = \"aut\", email = \"camille.sabathe@univ-nantes.fr\", comment = c(ORCID = \"0000-0001-9353-691X\")) )", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev python3 libx11-dev zlib1g-dev", "Repository": "https://chupverse.r-universe.dev", "Date/Publication": "2026-07-29 14:47:09 UTC", "RemoteUrl": "https://github.com/chupverse/survivalsl", "RemoteRef": "HEAD", "RemoteSha": "14260300f5b08433268e03080790638d041889d8", "Packaged": { "Date": "2026-10-08 12:01:34 UTC", "User": "root" }, "Author": "Yohann Foucher [aut, cre] (ORCID:\n),\nCamille Sabathe [aut] (ORCID: )", "Maintainer": "Yohann Foucher ", "_user": "chupverse", "_type": "src", "_file": "survivalSL_1.1.tar.gz", "_fileid": "https://r2.ropensci.org/fa0ded6ec876e64b9af9a14a904d989be663b3f91306683141a5bfe9c7064ea8", "_filesize": 321767, "_sha256": "fa0ded6ec876e64b9af9a14a904d989be663b3f91306683141a5bfe9c7064ea8", "_expires": "2027-01-16T12:10:51.000Z", "_created": "2026-10-08T12:01:34.000Z", "_published": "2026-10-08T12:10:53.001Z", "_buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113300338597, "time": 231, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11549006595" }, { "job": 113300338569, "time": 253, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11550100673" }, { "job": 113300338752, "time": 171, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11549003053" }, { "job": 113300338755, "time": 195, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11550036216" }, { "job": 113298365464, "time": 311, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11550000042" }, { "job": 113300338815, "time": 165, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11549531026" }, { "job": 113300338902, "time": 143, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11548991765" }, { "job": 113300338847, "time": 192, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11549985603" }, { "job": 113300338732, "time": 122, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11549046192" } ], "_upstream": "https://github.com/chupverse/survivalsl", "_commit": { "id": "14260300f5b08433268e03080790638d041889d8", "author": "Yohann Foucher <153531453+foucher-y@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #24 from foucher-y/main\n\nUpdate README.md", "time": 1785336429 }, "_maintainer": { "name": "Yohann Foucher", "email": "yohann.foucher@univ-poitiers.fr", "login": "foucher-y", "linkedin": "in/yohann-foucher", "orcid": "0000-0003-0330-7457", "description": "Professor in Biostatistics", "uuid": 153531453 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "splines", "role": "Depends" }, { "package": "survival", "role": "Depends" }, { "package": "date", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "glmnet", "role": "Imports" }, { "package": "caret", "role": "Imports" }, { "package": "flexsurv", "role": "Imports" }, { "package": "randomForestSRC", "role": "Imports" }, { "package": "hdnom", "role": "Imports" }, { "package": "survivalPLANN", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "rpart", "role": "Imports" }, { "package": "methods", "role": "Imports" } ], "_owner": "chupverse", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-50", "n": 2 }, { "week": "2025-51", "n": 1 }, { "week": "2026-02", "n": 1 }, { "week": "2026-23", "n": 6 }, { "week": "2026-26", "n": 2 }, { "week": "2026-30", "n": 2 }, { "week": "2026-31", "n": 4 } ], "_tags": [], "_stars": 12, "_contributors": [ { "user": "belkebir-mekki2000", "count": 164, "uuid": 195919641 }, { "user": "foucher-y", "count": 51, "uuid": 153531453 }, { "user": "joedekeizer", "count": 7, "uuid": 182775158 } ], "_userbio": { "uuid": 163420963, "type": "organization", "name": "Poitiers Health Data", "followers": 25, "description": "A collection of R packages and other codes from Poitiers Univeristy Hospital" }, "_downloads": { "count": 320, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/survivalSL" }, "_devurl": "https://github.com/chupverse/survivalsl", "_searchresults": 7, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/survivalSL.html" ], "_homeurl": "https://github.com/chupverse/survivalsl", "_realowner": "chupverse", "_cranurl": true, "_releases": [ { "version": "0.9", "date": "2023-04-20" }, { "version": "0.91", "date": "2023-06-25" }, { "version": "0.92", "date": "2024-02-15" }, { "version": "0.93", "date": "2024-02-23" }, { "version": "0.94", "date": "2024-03-19" }, { "version": "0.96", "date": "2024-08-27" }, { "version": "0.97", "date": "2025-01-29" }, { "version": "0.97.1", "date": "2025-02-17" }, { "version": "0.98", "date": "2025-07-02" }, { "version": "1.0", "date": "2025-12-16" }, { "version": "1.1", "date": "2026-07-29" } ], "_exports": [ "LIB_AFTgamma", "LIB_AFTggamma", "LIB_AFTllogis", "LIB_AFTweibull", "LIB_COXaic", "LIB_COXall", "LIB_COXen", "LIB_COXlasso", "LIB_COXridge", "LIB_PHexponential", "LIB_PHgompertz", "LIB_PHspline", "LIB_PLANN", "LIB_RSF", "metrics", "survivalSL", "tuneCOXen", "tuneCOXlasso", "tuneCOXridge", "tunePHspline", "tunePLANN", "tuneRSF" ], "_datasets": [ { "name": "dataDIVAT2", "title": "A Sample from the DIVAT Data Bank.", "object": "dataDIVAT2", "file": "dataDIVAT2.rda", "class": [ "data.frame" ], "fields": [ "age", "hla", "retransplant", "ecd", "times", "failures" ], "rows": 1837, "table": true, "tojson": true }, { "name": "dataDIVAT3", "title": "A Sample from the DIVAT Data Bank.", "object": "dataDIVAT3", "file": "dataDIVAT3.rda", "class": [ "data.frame" ], "fields": [ "ageR", "sexeR", "year.tx", "ante.diab", "pra", "ageD", "death.time", "death" ], "rows": 4267, "table": true, "tojson": true }, { "name": "dataOFSEP", "title": "A Simulated Sample from the OFSEP Cohort.", "object": "dataOFSEP", "file": "dataOFSEP.rda", "class": [ "data.frame" ], "fields": [ "time", "event", "age", "duration", "period", "gender", "relapse", "edss", "t1", "t2", "rio" ], "rows": 1300, "table": true, "tojson": true } ], "_help": [ { "page": "dataDIVAT2", "title": "A Sample from the DIVAT Data Bank.", "topics": [ "dataDIVAT2" ] }, { "page": "dataDIVAT3", "title": "A Sample from the DIVAT Data Bank.", "topics": [ "dataDIVAT3" ] }, { "page": "dataOFSEP", "title": "A Simulated Sample from the OFSEP Cohort.", "topics": [ "dataOFSEP" ] }, { "page": "LIB_AFTgamma", "title": "Library of the Super Learner for an Accelerated Failure Time (AFT) Model with a Gamma Distribution", "topics": [ "LIB_AFTgamma" ] }, { "page": "LIB_AFTggamma", "title": "Library of the Super Learner for an Accelerated Failure Time (AFT) Model with a Generalized Gamma Distribution", "topics": [ "LIB_AFTggamma" ] }, { "page": "LIB_AFTllogis", "title": "Library of the Super Learner for an Accelerated Failure Time (AFT) Model with a Log Logistic Distribution", "topics": [ "LIB_AFTllogis" ] }, { "page": "LIB_AFTweibull", "title": "Library of the Super Learner for an Accelerated Failure Time (AFT) Model with a Weibull Distribution", "topics": [ "LIB_AFTweibull" ] }, { "page": "LIB_COXaic", "title": "Library of the Super Learner for a Cox Model with Selected Covariates", "topics": [ "LIB_COXaic" ] }, { "page": "LIB_COXall", "title": "Library of the Super Learner for Cox Regression", "topics": [ "LIB_COXall" ] }, { "page": "LIB_COXen", "title": "Library of the Super Learner for Elastic Net Cox Regression", "topics": [ "LIB_COXen" ] }, { "page": "LIB_COXlasso", "title": "Library of the Super Learner for Lasso Cox Regression", "topics": [ "LIB_COXlasso" ] }, { "page": "LIB_COXridge", "title": "Library of the Super Learner for Ridge Cox Regression", "topics": [ "LIB_COXridge" ] }, { "page": "LIB_PHexponential", "title": "Library of the Super Learner for a Proportional Hazards (PH) Model with an Exponential Distribution", "topics": [ "LIB_PHexponential" ] }, { "page": "LIB_PHgompertz", "title": "Library of the Super Learner for an Proportional Hazards (PH) Model with a Gompertz Distribution", "topics": [ "LIB_PHgompertz" ] }, { "page": "LIB_PHspline", "title": "Library of the Super Learner for an Survival Regression using the Royston/Parmar Spline Model", "topics": [ "LIB_PHspline" ] }, { "page": "LIB_PLANN", "title": "Library of the Super Learner for Survival Neural Network Based on the PLANN Method", "topics": [ "LIB_PLANN" ] }, { "page": "LIB_RSF", "title": "Library of the Super Learner for Survival Random Survival Forest", "topics": [ "LIB_RSF" ] }, { "page": "metrics", "title": "Metrics to Evaluate the Prognostic Capacities", "topics": [ "metrics" ] }, { "page": "plot.libsl", "title": "Calibration Plot", "topics": [ "plot.libsl" ] }, { "page": "plot.sltime", "title": "Calibration Plot for Super Learner", "topics": [ "plot.sltime" ] }, { "page": "predict.libsl", "title": "Prediction from an Flexible Parametric Model", "topics": [ "predict.libsl" ] }, { "page": "predict.sltime", "title": "Prediction from a Super Learner for Censored Outcomes", "topics": [ "predict.sltime" ] }, { "page": "print.libsl", "title": "S3 Method for Printing an 'libsl' Object", "topics": [ "print.libsl" ] }, { "page": "print.sltime", "title": "S3 Method for Printing an 'sltime' Object", "topics": [ "print.sltime" ] }, { "page": "summary.libsl", "title": "S3 method for Summarizing a Learner", "topics": [ "print.summary.libsl", "summary.libsl" ] }, { "page": "summary.sltime", "title": "S3 method for Summarizing a Super Learner", "topics": [ "print.summary.sltime", "summary.sltime" ] }, { "page": "survivalSL", "title": "Super Learner for Censored Outcomes", "topics": [ "survivalSL" ] }, { "page": "tuneCOXen", "title": "Tune Elastic Net Cox Regression", "topics": [ "tuneCOXen" ] }, { "page": "tuneCOXlasso", "title": "Tune Lasso Cox Regression", "topics": [ "tuneCOXlasso" ] }, { "page": "tuneCOXridge", "title": "Tune Ridge Cox Regression", "topics": [ "tuneCOXridge" ] }, { "page": "tunePHspline", "title": "Tune a Survival Regression using the Royston/Parmar Spline Model", "topics": [ "tunePHspline" ] }, { "page": "tunePLANN", "title": "Tune a Survival Neural Network Based on the PLANN Method", "topics": [ "tunePLANN" ] }, { "page": "tuneRSF", "title": "Tune a Survival Random Forest", "topics": [ "tuneRSF" ] } ], "_readme": "https://github.com/chupverse/survivalsl/raw/HEAD/README.md", "_rundeps": [ "assertthat", "backports", "base64enc", "bbmle", "bdsmatrix", "bit", "bit64", "bitops", "bslib", "cachem", "caret", "caTools", "checkmate", "class", "cli", "clipr", "clock", "cluster", "cmprsk", "codetools", "colorspace", "cpp11", "crayon", "cubature", "cvAUC", "data.table", "data.tree", "date", "deSolve", "diagram", "DiagrammeR", "dials", "DiceDesign", "digest", "doParallel", "dplyr", "e1071", "evaluate", "farver", "fastGHQuad", "fastmap", "flexsurv", "fontawesome", "fontBitstreamVera", "fontLiberation", "fontquiver", "forcats", "foreach", "foreign", "Formula", "fs", "furrr", "future", "future.apply", "gam", "GauPro", "gdtools", "generics", "ggformula", "ggiraph", "ggplot2", "ggridges", "glmnet", "globals", "glue", "gower", "gplots", "gridExtra", "gtable", "gtools", "hardhat", "haven", "hdnom", "here", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "igraph", "ipred", "isoband", "iterators", "jquerylib", "jsonlite", "kernlab", "KernSmooth", "knitr", "labeling", "labelled", "lattice", "lava", "lazyeval", "lbfgs", "lifecycle", "listenv", "lsoda", "lubridate", "magrittr", "MASS", "Matrix", "MatrixModels", "memoise", "mets", "mgcv", "mime", "mixopt", "modelenv", "ModelMetrics", "mosaic", "mosaicCore", "mosaicData", "mstate", "muhaz", "multcomp", "mvtnorm", "ncvreg", "nlme", "nnet", "nnls", "numDeriv", "pammtools", "parallelly", "parsnip", "pec", "penalized", "pillar", "pkgconfig", "plotrix", "plyr", "png", "polspline", "prettyunits", "pROC", "prodlim", "progress", "progressr", "proxy", "Publish", "purrr", "quadprog", "quantreg", "R6", "randomForestSRC", "ranger", "rappdirs", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppTOML", "readr", "recipes", "relsurv", "reshape2", "reticulate", "RISCA", "riskRegression", "rlang", "rmarkdown", "rms", "ROCR", "rpart", "rprojroot", "rsample", "rstpm2", "rstudioapi", "S7", "sandwich", "sass", "scales", "scam", "sfd", "shape", "slider", "SparseM", "sparsevctrs", "splitfngr", "SQUAREM", "statmod", "stringi", "stringr", "SuperLearner", "survival", "survivalPLANN", "systemfonts", "tailor", "TH.data", "tibble", "tidyr", "tidyselect", "timechange", "timeDate", "timereg", "tinytex", "tune", "tzdb", "utf8", "vctrs", "viridisLite", "visNetwork", "vroom", "warp", "withr", "workflows", "xfun", "yaml", "yardstick", "zoo" ], "_score": 4.924279286061882, "_indexed": true, "_nocasepkg": "survivalsl", "_universes": [ "chupverse", "foucher-y" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1", "date": "2026-10-08T12:04:24.000Z", "distro": "resolute", "commit": "14260300f5b08433268e03080790638d041889d8", "fileid": "https://r2.ropensci.org/b45f0319eb72be5ef7e451270fce71595a523215b9aa8ab0ac39122f4adb4eb8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996" }, { "r": "4.6.1", "os": "linux", "version": "1.1", "date": "2026-10-08T12:04:39.000Z", "distro": "resolute", "commit": "14260300f5b08433268e03080790638d041889d8", "fileid": "https://r2.ropensci.org/97774e95ecbef74ac665dae63319d1934393e035a97cb482725b31bca898e50e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996" }, { "r": "4.5.3", "os": "mac", "version": "1.1", "date": "2026-10-08T12:09:10.000Z", "commit": "14260300f5b08433268e03080790638d041889d8", "fileid": "https://r2.ropensci.org/71f8e621c3f9ec06423ae029736eb5200b4e9bb0ec1421d70fa9b77ae973139f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996" }, { "r": "4.6.1", "os": "mac", "version": "1.1", "date": "2026-10-08T12:07:07.000Z", "commit": "14260300f5b08433268e03080790638d041889d8", "fileid": "https://r2.ropensci.org/5c8e41d2be5f3e1b09ff9472f546a3d2638444d623624d39b5a3ae30f616ce50", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996" }, { "r": "4.6.0", "os": "wasm", "version": "1.1", "date": "2026-10-08T12:04:43.000Z", "commit": "14260300f5b08433268e03080790638d041889d8", "fileid": "https://r2.ropensci.org/6fdc38c880b80814ef77d8ae5dfe830d2c7bba179c49382c3779db4a902a2b12", "status": "success", "buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996" }, { "r": "4.7.0", "os": "win", "version": "1.1", "date": "2026-10-08T12:03:06.000Z", "commit": "14260300f5b08433268e03080790638d041889d8", "fileid": "https://r2.ropensci.org/89f2be47813f0fe0978d0931b7acc699ead11f02f019bcb1b0d3c16e0a5e6e5b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996" }, { "r": "4.5.3", "os": "win", "version": "1.1", "date": "2026-10-08T12:03:30.000Z", "commit": "14260300f5b08433268e03080790638d041889d8", "fileid": "https://r2.ropensci.org/52819923ebf8b4c6c867c70dfd29728f0d255af28ff709f05607239651b996b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996" }, { "r": "4.6.1", "os": "win", "version": "1.1", "date": "2026-10-08T12:02:52.000Z", "commit": "14260300f5b08433268e03080790638d041889d8", "fileid": "https://r2.ropensci.org/41ec142cb48ee819c07eae9226af822404c26bd6857bf1a5bdfb330580126201", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/chupverse/actions/runs/37773338996" } ] }